Yonezawa, Yasushige: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

1

Denaturation and aggregation of hen egg lysozyme in aqueous ethanol solution studied by dynamic light scattering

Shinpei Tanaka, Yutaka Oda, Mitsuo Ataka, Kazuo Onuma, Satoru Fujiwara, Yasushige Yonezawa

Journal:

Year:

2001

Language:

english

File:

PDF, 202 KB

english, 2001

2

Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems

Gota Kikugawa, Rossen Apostolov, Narutoshi Kamiya, Makoto Taiji, Ryutaro Himeno, Haruki Nakamura, Yasushige Yonezawa

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 254 KB

english, 2009

3

An Insight into the Pathway of the Amyloid Fibril Formation of Hen Egg White Lysozyme Obtained from a Small-angle X-ray and Neutron Scattering Study

Yasushige Yonezawa, Shinpei Tanaka, Tomomi Kubota, Katsuzo Wakabayashi, Katsuhide Yutani, Satoru Fujiwara

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 546 KB

english, 2002

4

1P571 A Computational Study of Monoamine Oxidase A Dynamics(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Apostolov, Rossen, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 158 KB

english, 2006

5

Free Energy Landscapes of Alanine Dipeptide in Explicit Water Reproduced by the Force-Switching Wolf Method

Yonezawa, Yasushige, Fukuda, Ikuo, Kamiya, Narutoshi, Shimoyama, Hiromitsu, Nakamura, Haruki

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 1.67 MB

english, 2011

6

2P308 Simple and easy application of Wang-Landau method to molecular dynamics simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Shimoyama, Hiromitsu, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 230 KB

english, 2010

7

Molecular dynamics scheme for precise estimation of electrostatic interaction via zero-dipole summation principle

Fukuda, Ikuo, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

8

Free Energy Reconstruction from Logarithmic Mean-Force Dynamics using Multiple Nonequilibrium Trajectories

Morishita, Tetsuya, Yonezawa, Yasushige, Ito, Atsushi M

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

9

2P-039 Sampling enhancement for all-atom simulation using coarsegrained model(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Shimoyama, Hiromitsu, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

10

Exploring Reaction Pathways for Peptidylprolyl-Isomerase

Fujisaki, Hiroshi, Yonezawa, Yasushige, Shiga, Motoyuki, Maragliano, Luca, Tate, Shin-ichi

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

11

1P047 QM/MM simulation study on the mechanism of cis-trans isomerization of human Pin1 protein(Proteins-functions,Poster Presentations)

Yonezawa, Yasushige, Kamiya, Narutoshi, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2007

File:

PDF, 204 KB

2007

12

Consistent Molecular Dynamics Scheme Applying the Wolf Summation for Calculating Electrostatic Interaction of Particles

Fukuda, Ikuo, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Journal of the Physical Society of Japan

Year:

2008

Language:

english

File:

PDF, 186 KB

english, 2008

13

Direct Interaction between the Voltage-sensors Produces Cooperative Sustained Deactivation in Voltage-gated H + Channel Dimers

Okuda, Hiroko, Yonezawa, Yasushige, Takano, Yu, Okamura, Yasushi, Fujiwara, Yuichiro

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 2.08 MB

english, 2016

14

On-the-fly analysis of molecular dynamics simulation trajectories of proteins using the Bayesian inference method

Miyashita, Naoyuki, Yonezawa, Yasushige

Journal:

The Journal of Chemical Physics

Year:

2017

Language:

english

File:

PDF, 4.78 MB

english, 2017

15

1P579 Large-scale molecular dynamics simulations with the pairwise electrostatic interaction method for protein-solvent systems(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Kikugawa, Gota, Yonezawa, Yasushige, Nakamura, Haruki, Himeno, Ryutaro

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 146 KB

english, 2006

16

2P084 Study on 4'-Phosphopantetheinyl Transfer Reactions to Acyl Carrier Protein : the preliminary processes of Human Fatty Acid Synthesis(The 48th Annual Meeting of the Biophysical Society of Japan)

Yonezawa, Yasushige, Shimoyama, Hiromitsu, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 441 KB

english, 2010

17

3P-038 Ab Initio QM/MM simulation studies on the cis-trans Isomerization of Human Pin 1 Enzyme(The 46th Annual Meeting of the Biophysical Society of Japan)

Yonezawa, Yasushige, Kamiya, Narutoshi, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 283 KB

english, 2008

18

3P116 Structural Fundamentals for Monoamine Oxidase A Inhibition Control Revealed by Molecular Dynamics Simulations

Apostolov, Rossen, Yonezawa, Yasushige, Takano, Yu, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2005

File:

PDF, 270 KB

2005

19

A long-range electrostatic potential based on the Wolf method charge-neutral condition

Yonezawa, Yasushige

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 720 KB

english, 2012

20

Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification

Himiyama, Tomoki, Tsuchiya, Yuko, Yonezawa, Yasushige, Nakamura, Tsutomu

Journal:

Bioconjugate Chemistry

Year:

2020

File:

PDF, 6.19 MB

2020

21

[IEEE 2011 IEEE Seventh International Conference on e-Science Workshops (eScienceW) - Stockholm, Sweden (2011.12.5-2011.12.8)] 2011 IEEE Seventh International Conference on e-Science Workshops - Effective Computational Method for Evaluation of Dynamic Elecrostatic Effects of Explicit Solvent and Membrane Molecules from Molecular Dynamics Simulations

Yonezawa, Yasushige

Year:

2011

Language:

english

File:

PDF, 5.31 MB

english, 2011

22

Membrane Attachment Facilitates Ligand Access to the Active Site in Monoamine Oxidase A

Apostolov, Rossen, Yonezawa, Yasushige, Standley, Daron M., Kikugawa, Gota, Takano, Yu, Nakamura, Haruki

Journal:

Year:

2009

Language:

english

File:

PDF, 6.81 MB

english, 2009

23

AIP Conference Proceedings [AIP INTERNATIONAL CONFERENCE OF COMPUTATIONAL METHODS IN SCIENCES AND ENGINEERING 2009: (ICCMSE 2009) - Rhodes, Greece (29 September–4 October 2009)] - Locality and nonlocality of electronic structures of molecular systems: Toward QM/MM and QM/QM approaches

Yamanaka, Shusuke, Yonezawa, Yasushige, Nakata, Kazuto, Nishihara, Satomichi, Okumura, Mitsutaka, Takada, Toshikazu, Yamaguchi, Kizashi, Nakamura, Haruki

Year:

2012

Language:

english

File:

PDF, 844 KB

english, 2012

24

Atomistic detailed freeâenergy landscape of intrinsically disordered protein studied by multiâscale divideâandâconquer molecular dynamics simulation

Shimoyama, Hiromitsu, Yonezawa, Yasushige

Journal:

Journal of Computational Chemistry

Year:

2020

File:

PDF, 1.58 MB

2020

25

Molecular Dynamics Study of the Phosphorylation Effect on the Conformational States of the C-Terminal Domain of RNA Polymerase II

Yonezawa, Yasushige

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.33 MB

english, 2014

26

Allosteric Activation of Cytochrome P450 3A4 by Efavirenz Facilitates Midazolam Binding

Ichikawa, Tomohiko, Tsujino, Hirofumi, Miki, Takahiro, Kobayashi, Masaya, Matsubara, Chiaki, Miyata, Sara, Yamashita, Taku, Takeshita, Kohei, Yonezawa, Yasushige, Uno, Tadayuki

Journal:

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

27

1P-067 Improvement of Sampling Efficiency of Multicanonical Molecular Dynamics by Trivial Parallelization(Protein:Measurement & Analysis, The 47th Annual Meeting of the Biophysical Society of Japan)

Ikebe, Jinzen, Umezawa, Koji, Higo, Junichi, Kamiya, Narutoshi, Sugihara, Takanori, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 240 KB

english, 2009

28

Intra- and Intermolecular Interaction Inducing Pyramidalization on Both Sides of a Proline Dipeptide during Isomerization: An Ab Initio QM/MM Molecular Dynamics Simulation Study in Explicit Water

Yonezawa, Yasushige, Nakata, Kazuto, Sakakura, Kota, Takada, Toshikazu, Nakamura, Haruki

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 281 KB

english, 2009

29

2SP6-03 Towards Understanding of Protein Electronic Structures and their Biochemical Reactions by Supercomputing(2SP6 Towards Supercomputing for Electronic Structures of Biological Macromolecules,The 47th Annual Meeting of the Biophysical Society of Japan)

Yonezawa, Yasushige, Takano, Yu, Yamasaki, Hideki, Yamanaka, Syusuke

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 243 KB

english, 2009

30

Loosening of Side-Chain Packing Associated with Perturbations in Peripheral Dynamics Induced by the D76N Mutation of β2-Microglobulin Revealed by Pressure-NMR and Molecular Dynamic Simulations

Sakurai, Kazumasa, Tomiyama, Ryosuke, Shiraki, Takuma, Yonezawa, Yasushige

Journal:

Year:

2019

File:

PDF, 3.61 MB

2019

31

Flexible docking of an amyloid-forming peptide from β2-microglobulin

Daron M. Standley, Yasushige Yonezawa, Yuji Goto, Haruki Nakamura

Journal:

Year:

2006

Language:

english

File:

PDF, 717 KB

english, 2006

32

Simple and effective application of the Wang–Landau method for multicanonical molecular dynamics simulation

Shimoyama, Hiromitsu, Nakamura, Haruki, Yonezawa, Yasushige

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 632 KB

english, 2011

33

2P067 Stability of the Tobacco Mosaic Virus Coat Protein Assemblage(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Fukao, Hiroaki, Sakurai, Kazumasa, Yonezawa, Yasushige, Fujisawa, Masao, Ishibashi, Kazuhiro, Ishikawa, Masayuki, Meshi, Tetsuo, Tachibana, Hideki

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 694 KB

english, 2014

34

1P021 Conformational transitions in the CDRH3 region of the antidansyl monoclonal antibody by molecular dynamics simulations(Protein:Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Kamiya, Narutoshi, Ikebe, Jinzen, Umezawa, Koji, Yonezawa, Yasushige, Higo, Junichi, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 229 KB

english, 2010

35

1P118 A Computational Study of Monoamine Oxidase A Dynamics(Membrane proteins,Poster Presentations)

Apostolov, Rossen, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2007

Language:

english

File:

PDF, 218 KB

english, 2007

36

A method for predicting protein conformational pathways by using molecular dynamics simulations guided by difference distance matrices

Yonezawa, Yasushige

Journal:

Journal of Computational Chemistry

Year:

2016

Language:

english

File:

PDF, 659 KB

english, 2016

37

[AIP COMPLEX SYSTEMS: 5th International Workshop on Complex Systems - ()] AIP Conference Proceedings - A Simple Efficient Molecular Dynamics Scheme for Evaluating Electrostatic Interaction of Particle Systems

Fukuda, Ikuo, Yonezawa, Yasushige, Nakamura, Haruki, Tokuyama, Michio, Oppenheim, Irwin, Nishiyama, Hideya

Year:

2008

Language:

english

File:

PDF, 171 KB

english, 2008

38

Development of massive multilevel molecular dynamics simulation program, platypus (PLATform for dYnamic protein unified simulation), for the elucidation of protein functions

Takano, Yu, Nakata, Kazuto, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Journal of Computational Chemistry

Year:

2016

Language:

english

File:

PDF, 607 KB

english, 2016

39

1P048 Flexible docking multicanonical molecular dynamics simulations between factor Xa and its inhibitors(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Kamiya, Narutoshi, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 154 KB

english, 2006

40

Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water

Jinzen Ikebe, Koji Umezawa, Narutoshi Kamiya, Takanori Sugihara, Yasushige Yonezawa, Yu Takano, Haruki Nakamura, Junichi Higo

Journal:

Journal of Computational Chemistry

Year:

2011

Language:

english

File:

PDF, 2.00 MB

english, 2011

41

Effects of Salt Concentration on Association of the Amyloid Protofilaments of Hen Egg White Lysozyme Studied by Time-resolved Neutron Scattering

Satoru Fujiwara, Fumiko Matsumoto, Yasushige Yonezawa

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 213 KB

english, 2003

42

Enhanced free-energy calculation using multiscale simulation

Shimoyama, Hiromitsu, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 928 KB

english, 2010

43

Multicanonical molecular dynamics simulations combined with Metadynamics for the free energy landscape of a biomolecular system with high energy barriers

Yasushige Yonezawa, Hiromitsu Shimoyama, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2011

Language:

english

File:

PDF, 516 KB

english, 2011

44

Simple and accurate scheme to compute electrostatic interaction: Zero-dipole summation technique for molecular system and application to bulk water

Fukuda, Ikuo, Kamiya, Narutoshi, Yonezawa, Yasushige, Nakamura, Haruki

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 1.65 MB

english, 2012

45

Electrostatic properties of water models evaluated by a long-range potential based solely on the Wolf charge-neutral condition

Yonezawa, Yasushige

Journal:

Chemical Physics Letters

Year:

2013

Language:

english

File:

PDF, 734 KB

english, 2013

46

Substrate recognition of N,N′-diacetylchitobiose deacetylase from Pyrococcus horikoshii

Nakamura, Tsutomu, Yonezawa, Yasushige, Tsuchiya, Yuko, Niiyama, Mayumi, Ida, Kurumi, Oshima, Maki, Morita, Junji, Uegaki, Koichi

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

47

Autoencoder-based detection of dynamic allostery triggered by ligand binding based on molecular dynamics

Tsuchiya, Yuko, Taneishi, Kei, Yonezawa, Yasushige

Journal:

Journal of Chemical Information and Modeling

Year:

2019

Language:

english

File:

PDF, 702 KB

english, 2019

48

Verifying trivial parallelization of multicanonical molecular dynamics for conformational sampling of a polypeptide in explicit water

Junichi Higo, Narutoshi Kamiya, Takanori Sugihara, Yasushige Yonezawa, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2009

Language:

english

File:

PDF, 422 KB

english, 2009

49

Molecular dynamics simulation study on water associated with π-electrons of benzene by using QM/MM potential

Yasushige Yonezawa, Kazuto Nakata, Toshikazu Takada, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2006

Language:

english

File:

PDF, 197 KB

english, 2006

50

Degree of pyramidality governs the height and peak position of the free-energy-barrier for the cis–trans isomerization of N-Methylacetamide

Yasushige Yonezawa, Daron M. Standley, Haruki Nakamura

Journal:

Chemical Physics Letters

Year:

2011

Language:

english

File:

PDF, 290 KB

english, 2011

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@1delivery.pm

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски